PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G090800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 492aa    MW: 53391 Da    PI: 8.3309
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G090800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.89e-16105197186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                         +W++  + +L+ea +e+ ++l+rg+l++ +Weev++ +          +   ++ +qCk+k++nl+kryk + ++  +      s++ +f+
  Prupe.2G090800.1.p 105 EWSDTAIACLLEAFTEKFNQLNRGNLRGRDWEEVAEMVsercgtggGNKSTYKTVEQCKNKIDNLKKRYKVELQRITSS-GLGASHWHWFK 194
                         5*************************************999999998888999*****************999998884.788889***** PP

            trihelix  84 qle 86 
                         +le
  Prupe.2G090800.1.p 195 KLE 197
                         997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-19103197No hitNo description
Gene3DG3DSA:3.40.1160.102.8E-65244484IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.875251485IPR015963Uridylate kinase, bacteria
SuperFamilySSF536337.46E-53251484IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.26E-109254485No hitNo description
PfamPF006965.8E-20254464IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MASSDDFPLI DSSSHLHAPP RPRDTIDSTT TANNGDFFPR PFPDDPDRSP NQTRTPNTKR  60
SSYYYKKLKP SSANPNPTTS TTEAESSSGQ EMASQRGDYR KDREEWSDTA IACLLEAFTE  120
KFNQLNRGNL RGRDWEEVAE MVSERCGTGG GNKSTYKTVE QCKNKIDNLK KRYKVELQRI  180
TSSGLGASHW HWFKKLEVIL GSSLVPKGGG GSDEERSGGR ANSNVAKQPK RYTPGSTGFT  240
NNLKSKSMPN VKWKRVMLKI SGAALAGDCQ SIDPKVATQI AEEVARACRL GVEVAIVVGG  300
CNFFCGDTWV SSTGLDRSAA YQIGMMATVM NSVLLQSALE KVGVQARVQT ALTMPEVSEP  360
YNRLRAIRHL EKGRVVIFGG IGAGTGNYLF TTDIAAALRA SELNAEAVLK GTNFNGIYEC  420
HSGSNSVTVD HTCYREVVSR GITSVDVMAL TYCEENGIPV VIFNLLEPGN ISRALCGDQV  480
GTLIDQAGRI G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A4e-6120448414279Uridylate kinase
3nwy_B4e-6120448414279Uridylate kinase
3nwy_C4e-6120448414279Uridylate kinase
3nwy_D4e-6120448414279Uridylate kinase
3nwy_E4e-6120448414279Uridylate kinase
3nwy_F4e-6120448414279Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232036.10.0PREDICTED: uncharacterized protein LOC103331205, partial
TrEMBLM5X5G10.0M5X5G1_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_13s0074g00240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-175Trihelix family protein